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Showing :
Michael Love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
4.8 years ago
cp1015
• 0
0
votes
4
replies
763
views
DESeq2 Design Formula
DESeq2
michael love
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.1k
views
DESeq2 PCA plotting
deseq2
michael love
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
sam.far.7
• 0
1
vote
11
replies
1.6k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
Ashu
▴ 10
2
votes
3
replies
1.5k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
ap874
• 0
5
votes
10
replies
11k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
pvd2107
▴ 30
6 results • Page
1 of 1
Recent ...
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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